| 1 | Main Title (The Second Star to the Right) / All This Has Happened Before The Jud Conlon Chorus, The Mellomen | - |
| 2 | The Last Night in the Nursery Oliver Wallace | - |
| 3 | On the Rooftop / What’s a Kiss? / Perturbed Pixie Oliver Wallace | - |
| 4 | You Can Fly! You Can Fly! You Can Fly! Bobby Driscoll, Kathryn Beaumont, Paul Collins, Tommy Luske, The Jud Conlon Chorus and The Mellomen | - |
| 5 | A Pirate’s Life The Mellomen | - |
| 6 | Blast That Peter Pan / A Pirate’s Life (reprise) Oliver Wallace | - |
| 7 | The Legend of the Croc / Double the Powder and Shorten the Fuse / Follow Tinker Bell Oliver Wallace | - |
| 8 | Just When I Brought You a Mother / Banished Oliver Wallace | - |
| 9 | Following the Leader Bobby Driscoll, Paul Collins, Tommy Luske & the Lost Boys | - |
| 10 | Hide and Sneak / No Let ’em Go Oliver Wallace | - |
| 11 | Mermaid Lagoon / Bad Day at Skull Rock Oliver Wallace | - |
| 12 | Plotting a Pixie’s Plight Oliver Wallace | - |
| 13 | What Made the Red Man Red? / Tinknapped Candy Candido, The Mellomen | - |
| 14 | Rumor Has It / Hangman’s Tree Oliver Wallace | - |
| 15 | Big Chief Flying Eagle / I Had a Mother Once Oliver Wallace | - |
| 16 | Your Mother and Mine Kathryn Beaumont | - |
| 17 | Good‐Bye Peter / Shanghaied Oliver Wallace | - |
| 18 | Captain Hook Never Breaks a Promise / The Elegant Captain Hook / A Little Surprise / Oh Tink / The Pen or the Plank Hans Conried, Bill Thompson, The Mellomen | - |
| 19 | No Splash / Take That / I’m a Codfish! / Crocbait / The Hero of Neverland Oliver Wallace | - |
| 20 | Home Again / Mermaids, Pirates and Indians / Finale (You Can Fly! You Can Fly! You Can Fly!) The Jud Conlon Chorus | - |
| 21 | Never Smile at a Crocodile | - |
| 22 | The Boatswain’s Song (demo) Oliver Wallace | - |
